Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015924096.1_cds_XP_016472531.1_64757
CDS Infomation

[gene=LOC107794547] [db_xref=GeneID:107794547] [protein=DEAD-box ATP-dependent RNA helicase 39-like] [protein_id=XP_016472531.1] [location=join(961..1503,4350..4445,4529..4717,4787..4927,5731..5871,6483..6625,7182..7311,7418..7466,8029..8480)] [gbkey=CDS]
Sequence

ATGGGAGGAACAGGAAGAGCACTGCTAAACCTCTCTCTCACTTCCTCCTCCACTTCTTCC
TTCCGTTTCTCTTTCTCTCTCCTCCCTTCCCGTTTGCCTTTCTCCACAAAACCACTTCTT
CCCCACCCCCCTAGGGTTTTACTAGGGTTTAGACCCCTTTGTTCTGCCACCACCACCACA
ACTGCTACTGAAGAATCACTAATTCAACCCATTAAACATTCAATTCTTTTAGAAAGGCTT
AGACTTAGACATCTTAAAGAATCTGCAAAGCCCACTTTAGAACCCAAACAACTAACACAA
AAATTTAAAGCTGAGGTGAATGATGATGGAGTTAAGAAGAGTAAAAAAAAAGCGGTGGCG
TCGAGTTTTGAGGAGTTAGGTTTGAGTGAAGAGGTTATGGGGGCTTTAGGTGAAATGGGT
ATTGAAGTGCCGACTGAGATTCAGTCAATTGGGATACCTGCTGTGATTGAGGGGAAAAGT
GTGGTTTTGGGTTCGCATACGGGATCTGGCAAGACTCTTGCTTATATGTTGCCTATTGTT
CAGTTGTTGAGACAAGAAGAGGAATTCCATGGTATGCACATGAAGCCTAGGCGCCCCCGA
GCTGTTGTGCTATGCCCTACTAGGGAGCTCTGTGAGCAGGTTTTTCGTGTGGCAAAGTCT
ATCAGTCATCATGCACGGTTCAGATCTACCATGGTTAGTGGCGGCGGCCGTTTGAGACCT
CAAGAAGATTCTTTGGGTGGCCCAATTGACATGATTGTGGGGACTCCAGGCAGGGTTCTA
CAACATATTGAAGAGGGAAACGTGGTTTATGGTGACATCAGATACTTGGTCTTGGATGAG
GCTGATACCATGTTTGATCGCGGTTTTGGTCCTGATATACGAAAATTTCTTGCACCACTG
AAAAACCGTGCTTCGAAGCCTGGTGATGAAGGATTTCAAACTGTGTTGGTGACAGCAACA
ATGACAAAGGCAGTTCAAAAGTTGGTTGACGAGGAGTTTCAAGGGATTCAGCATTTACGT
ACTTCTACATTACATAAGAAGATTGCTTCTGCTCGTCATGATTTCATCAAACTTTCAGGT
TCTGAGAACAAGCTGGAGGCGTTGCTACAGGTTCTTGAGCCAAGTTTAGCAAAGGGCAAT
AGAGTGATGGTATTCTGTAACACGTTGAATTCCAGTCGTGCTGTGGATCACTTTCTCAGT
GAAAACCAATTTTCTACTGTTAACTACCATGGGGAAGTTCCAGCAGAACAAAGGGTTGAA
AACCTTGCAAAGTTTAAGAGCGATGAAGGAGATTGTCCCACTTTGGTCTGCACAGACTTG
GCTGCTAGAGGGCTGGATTTAGATGTGGATCATGTCGTCATGTTTGATTTCCCTAAGAAT
TCTATTGATTATCTCCATCGCACTGGAAGGACTGCTCGTATGGGTGCCAAAGGGAAAGTT
ACAAGTTTGGTTTCCAAAAAGGACTTGCTTTTAGCCGCTCGCATCGAGGAAGCCATGATG
AAGAATGAGAGCTTGGAGGCTCTCTCAGTAGACGGTGTCAAAAGGGATATTGCCAGGTCT
CGCATAACTGAACAGAAGGACAAGCGTGAAAAGTTGGTCAAAGTTTCAAATTCAAGAGGC
AAGACTAAAGCTTCCACAGGTAAATCCTCCAGTGTTCGCAGAAAGACCGATCCAAAAAAA
TCTTCCGGAGCAAAGTCTGGCAAAGTACCAGCTAAGTCAAAACCAACCATAGCAATCAAG
GTATCAAAGAGGGTTAGCACTTCCACTGGTAAGAAACGAGGAGACAGTCGAAGCTCTAGC
GTCTCCACGTCGAAACTAAATGTTGTTGGATTCAGGGGCAGGAGTTCATCATCGAGTAAA
AACGCAAATGTTAGGGCTGGTTAA

Peptide Sequence

PEP ID

XP_016472531.1
PEP Infomation

PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Nicotiana tabacum]
Sequence

MGGTGRALLNLSLTSSSTSSFRFSFSLLPSRLPFSTKPLLPHPPRVLLGFRPLCSATTTT
TATEESLIQPIKHSILLERLRLRHLKESAKPTLEPKQLTQKFKAEVNDDGVKKSKKKAVA
SSFEELGLSEEVMGALGEMGIEVPTEIQSIGIPAVIEGKSVVLGSHTGSGKTLAYMLPIV
QLLRQEEEFHGMHMKPRRPRAVVLCPTRELCEQVFRVAKSISHHARFRSTMVSGGGRLRP
QEDSLGGPIDMIVGTPGRVLQHIEEGNVVYGDIRYLVLDEADTMFDRGFGPDIRKFLAPL
KNRASKPGDEGFQTVLVTATMTKAVQKLVDEEFQGIQHLRTSTLHKKIASARHDFIKLSG
SENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLSENQFSTVNYHGEVPAEQRVE
NLAKFKSDEGDCPTLVCTDLAARGLDLDVDHVVMFDFPKNSIDYLHRTGRTARMGAKGKV
TSLVSKKDLLLAARIEEAMMKNESLEALSVDGVKRDIARSRITEQKDKREKLVKVSNSRG
KTKASTGKSSSVRRKTDPKKSSGAKSGKVPAKSKPTIAIKVSKRVSTSTGKKRGDSRSSS
VSTSKLNVVGFRGRSSSSSKNANVRAG

Transcript Sequence

Gene sequence data has not been registered.